Reviews:

Gaasterland, T. & Bekiranov, S. Making the most of microarray data. Nat Genet 24, 204-6 (2000).

Kell, D.B. & King, R.D. On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning. Trends Biotechnol 18, 93-8 (2000).

Statistics Books and Methods

A. Basilevsky. Statistical Factor Analysis and Related Methods, Theory and Applications. 1994 John Wiley & Sons, New York, NY.

Hastie, T.J., Buja, A. & Tibshirani, R. Penalized Discriminant Analysis. The Annals of Statistics 23, 73-102 (1995)

Ripley, B.D. Pattern Recognition and Neural Networks, (Cambridge University Press, New York, 1996).

B.S. Everitt and G. Dunn. Applied Multivariate Data Analysis. 1992 Oxford University Press, New York, NY.

Applications of Machine Learning to Microarrays

Eisen, M.B., Spellman, P.T., Brown, P.O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95, 14863-8 (1998).

Toronen, P., Kolehmainen, M., Wong, G. & Castren, E. Analysis of gene expression data using self-organizing maps. FEBS Lett 451, 142-6 (1999).

Wen, X. et al. Large-scale temporal gene expression mapping of central nervous system development. Proc Natl Acad Sci U S A 95, 334-9 (1998).

Golub, T.R. et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286, 531-7 (1999).

Brown, M.P. et al. Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc Natl Acad Sci USA 97, 262-267 (2000).

Raychaudhuri, S., Stuart, J.M., Liu, X., Small, P.M. & Altman, R.B. Pattern recognition of genomic features with microarrays : site typing of Mycobacterium Tuberculosis strains. in Ismb in press (, San Diego, 2000).

Raychaudhuri, S., Stuart, J.M. & Altman, R.B. Principal components analysis to summarize microarray experiments : application to sporulation time series. in Pac Symp Biocomput 455-66 (World Scientific Press, Waikiki, 2000).

Alizadeh, A.A. et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-511 (2000).

Microarray Technique

M. Schena, D. Shalon, R.W. Davis, and P.O. Brown. "Quantitative monitoring of gene expression patterns with a complementary DNA microarray" Science 270, 467-470 (1995)

M. Chee, R. Yang, E. Hubbel, A. Berno, X. C. Huang, D. Stern, J. Winkler, D.J. Lockhart, M.S. Morris,and S.P.A. Fodor. "Accessing Genetic Information with High-Density DNA Arrays" Science 274, 610-614 (1996)